miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004335
species: Oryza sativa
miRNA family: MIRf75
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGCGAGACGAATCTTTTAAGC

miRNA*
 TTAATAAATTCGTTTTGTGGT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TAGACAAATTAAAAAACTAATTGCACAATTTGTATGAAAATCGCGAGACGAATCTTTTAAGCATAATTAATCTATGATTAGCCATAATTGCTATATTAAC
TAATTAATTAGGCTTAATAAATTCGTTTTGTGGTTTTTAGGCGAGTTATGAAATTAGTTTTCTCATTCGTGT

dot-bracket secondary structure
............((((((((((.((.(((((((.(((((((((((((((((((...((((((.((((((((...((((((((.......)))).))))..
..)))))))).))))))...))))))))))))))))))).))))))).)).))))))))))..((....)).


SIMILARITIES
miRBase osa-MIR2124a: 0.000000009

PMRD osa-miRf11301-akr: 3e-18

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;